ProBE Lab

Publications

Journal Publications

  1. Hallac R, Zhou H, Pidikiti R, Song K, Solberg T, Kodibagkar VD, Peschke P, and Mason RP,  A role for dynamic contrast enhanced magnetic resonance imaging in predicting tumor radiation response. British Journal of Cancer, 2016 (Accepted 3/22/16).
  2. Addington C, Cusick A, Shankar RV, Agarwal S, Stabenfeldt SE*, Kodibagkar VD*, Siloxane nanoprobes for labeling and dual functional modality imaging of neural stem cells. Annals of Biomedical Engineering, 2015 44(3):816-827. PMID: 26597417
  3. Maguire ML, Geethanath S, Lygate C, Kodibagkar VD, Schneider JE. Compressed sensing to accelerate magnetic resonance spectroscopic imaging: evaluation and application to 23Na imaging of mouse hearts. Journal of Cardiovascular Magnetic Resonance, 2015;17:45. PMID: 26073300
  4. Geethanath S, Gulaka PK, Kodibagkar VD. Acceleration of conventional data acquisition in dynamic contrast enhancement: comparing keyhole approaches with compressive sensing. Critical Reviews in Biomedical Engineering, 2014;42(6):437-50. PMID: 25955710
  5. Gulaka PK,  Rojas-Quijano FA, Kovács Z, Mason RP, Sherry AD, Kodibagkar VD. GdDO3NI, a nitroimidazole-based T1 MR contrast agent for imaging tumor hypoxia in vivo. Journal of Biological and Inorganic Chemistry, 2014;19(2):271-9. PMID:24281854
  6. Lewis MA, Richer E, Slavine N, Kodibagkar VD, Soesbe T, Antich PP, Mason RP. A Multi-Camera System for Bioluminescence Tomography in Preclinical Oncology Research. Diagnostics 2013 3(3):325-343. PMID 23602729
  7. Walker C, Pushpavanam K, Nair D, Potta T, Sutiyoso C, Kodibagkar VD, Sapareto S, Chang J, Rege K. Generation of Polypeptide-Templated Gold Nanoparticles using Ionizing Radiation. Langmuir, 2013;29(32):10166-10173. PMID 23786455
  8. Yu J, Kodibagkar VD, Liu L, Zhang Z, Liu L, Magnusson J, Liu Y. 19F-MRS/1H MRI Dual function probe for detection of β-galactosidase activity. Chemical Science, 2013, 4:2132-2142
  9. Gulaka PK, Yu J, Liu L, Mason RP, Kodibagkar VD. Novel S-Gal® analogs as 1H MRI reporters for in vivo detection of β-galactosidase. Magn. Reson Imaging 2013, 31(6):1006-11. PMID:23602729
  10. Menon JU, Gulaka PK, McKay MA, Geethanath S, Liu L, Kodibagkar VD. Dual-Modality, Dual-Functional Nanoprobes for Cellular and Molecular Imaging. Theranostics, 2012, 2(12):1199-1207. PMID 23382776
  11. Rojas-Quijano FA, Tircsó G, Benyó ET, Baranyai Z, Hoang HT, Kálmán FK, Gulaka PK, Kodibagkar VD, Aime S, Kovács Z, Sherry AD. Synthesis and Characterization of a Hypoxia Sensitive MRI Probe. Chemistry, 2012, 18(31):9669-76. PMID 22740186
  12. Jordan VC, Kodibagkar VD, Beeman S, Hann B, Bennett KM.  Principles and emerging applications of nanomagnetic materials in medicine. Wiley Interdiscip Rev Nanomed & Nanobiotechnol, 2012, 4(4):345-65. PMID 22488879
  13. Yu J, Gulaka PK, Liu L, Kodibagkar VD, Mason RP. Novel Fe3+-Based 1H MRI β-Galactosidase Reporter Molecules. ChemPlusChem, 2012, 77(5): 370-378. PMID 23807909
  14. Yu J, Kodibagkar VD, Hallac RR, Liu L, Mason RP.  Dual 19F/1H MR gene reporter molecules for in vivo detection of β-galactosidase. Bioconjugate Chemistry, 2012, 23(3):596-603. PMID 22352428
  15. Geethanath S, Baek H, Ganji SK, Ding Y, Maher EA, Sims RD, Choi C, Lewis MA, Kodibagkar VD. Compressive sensing could accelerate 1H MR metabolic imaging in the clinic. Radiology, 2012, 262(3):985-94. PMID 22357898
  16. Liu S, Shah SJ, Wilmes LJ, Feiner J, Kodibagkar VD, Wendland MF, Mason RP, Hylton N, Hopf HW, Rollins MD. Quantitative Tissue Oxygen Measurement in Multiple Organs Using 19F MRI in a Rat Model. Magn Reson Med, 2011, 66:1722–1730. PMID 21688315
  17. Kucejova B, Sunny N, Nguyen AD, Hallac R, Fu X, Pena-Llopis S, Mason RP, DeBerardinis R, Xie X, DeBose-Boyd R, Kodibagkar VD, Burgess S, and Brugarolas J. Uncoupling oxygen sensing from hypoxia signaling in the liver results in hypoketonic hypoglycemic death. Oncogene.2011, 30(18):2147-2160. PMID21217781
  18. Gulaka PK, Rastogi U, McKay MA, Wang X, Mason RP, Kodibagkar VD. Hexamethyldisiloxane based nanoprobes for 1H MRI oximetry. NMR Biomed, 2011, 24(10):1226-34. PMID 21412864
  19. Lewis MA, Kodibagkar VD, Oz OK, Mason RP. On the potential for molecular imaging with Cerenkov luminescence. Optics Lett., 2010,35(23), 3889. PMID 21124555
  20. Mason RP, Zhao D, Pacheco-Torres J, Cui W, Kodibagkar VD, Gulaka PK, Hao G, Thorpe P, Hahn EW, Peschke P. Multimodality imaging of hypoxia in preclinical settings. Q J Nucl Med Mol Imaging 2010;54(3), 259-280. PMID 20639813
  21. Cui W, Liu L, Kodibagkar VD, Mason RP. S-Gal®, A Novel 1H MRI Reporter for β-Galactosidase. Magn Reson. Med. 2010, 64(1):65-71. PMID 20572145
  22. Zhou Y, Gulaka P, Zhou J, Xiao M, Xu D, Hsieh JT, Kodibagkar VD, Sun X. Preparation and Evaluation of a Radioisotope-incorporated Iron Oxide Core/Au Shell Nanoplatform for Dual Modality Imaging. J Biomed Nanotech. 2008; 4, 474–481.
  23. Kodibagkar VD, Wang X, Pacheco-Torres J, Gulaka P, Mason RP. Proton Imaging of Siloxanes to map Tissue Oxygenation Levels (PISTOL): a tool for quantitative tissue oximetry. NMR Biomed. 2008; 21(8) 899-907. PMID 18574806
  24. Yu J*, Kodibagkar VD*, Liu L, Mason RP. A 19F-NMR approach using reporter molecule pairs to assess beta-galactosidase in human xenograft tumors in vivo. NMR Biomed.2008; 21(7) 704-712. PMID 18288788
  25. Jennewein M, Lewis MA, Zhao D, Tsyganov E, Slavine N, He J, Watkins L, Kodibagkar VD, O’Kelly S, Kulkarni P, Antich PP, Hermanne A, Rösch F, Mason RP, Thorpe PE. Vascular Imaging of Solid Tumors in Rats with a Radioactive Arsenic-Labeled Antibody that Binds Exposed Phosphatidylserine. Clin Cancer Res. 2008;14(5):1377-85. PMID 18316558
  26. Kodibagkar VD, Wang X, Mason RP. Physical principles of quantitative nuclear magnetic resonance oximetry”. Front Biosci. 2008;13:1371-84. PMID 17981636
  27. Ali MM, Woods M, Suh EH, Kovacs Z, Tircso G, Zhao P, Kodibagkar VD, Sherry AD. Albumin-binding PARACEST agents. J Biol Inorg Chem. 2007; 12(6):855-65. PMID 17534672
  28. Liu L, Kodibagkar VD, Yu J, Mason RP. 19F-NMR detection of lacZ gene expression via the enzymic hydrolysis of 2-fluoro-4-nitrophenyl -D-galactopyranoside in vivo in PC3 prostate tumor xenografts in the mouse. FASEB J., 2007; 21(9):2014-9. PMID 17351127
  29. Kodibagkar VD, Yu J, Liu L, Hetherington HE, Mason RP. Imaging b-Galactosidase activity using 19F CSI of LacZ gene-reporter molecule 2-Fluoro-4-nitrophenol-b-D-galactopyranoside (OFPNPG). Magn. Reson Imaging 2006, 24(7): 959-62. PMID 16916713
  30. Kodibagkar VD, Cui W, Merritt ME, Mason RP. Hexamethyldisiloxane (HMDSO) a novel reporter molecule for in vivo oximetry. Magn Reson Med. 2006, 55:743-748. PMID 16506157
  31. Xia M, Kodibagkar VD, Constantinescu A, Mason RP, Liu H. Tumor oxygen dynamics measured simultaneously by near-infrared spectroscopy and 19F MR EPI imaging in rats, Phys. Med. Biol. 2006, 51(1):45-60. PMID 16557430
  32. Yu J, Liu L, Kodibagkar VD, Cui W, Mason RP. Synthesis and Evaluation of Novel Enhanced Gene Reporter Molecules: Detection of b-Galactosidase Activity Using 19F NMR of Trifluoromethylated Aryl b-D-Galactopyranosides. Bioorg. Med. Chem 2006; 14(2):326-33. PMID 16185878
  33. Yu* J, Kodibagkar VD*, Cui W, Mason RP. 19F: A versatile reporter for non-invasive physiology and pharmacology using magnetic resonance. Curr. Med. Chem 2005; 12:819-848. PMID 15853714
  34. Kodibagkar VD, Browning CD, Tang X, Wu Y, Bowman Jr. RC, Conradi MS. Magnetic Alignment in Nominally Non-Magnetic Hexagonal Metal Hydrides. Solid State Nuc Magn Reson 2003;24(4):254-262. PMID 14642420
  35. Kodibagkar VD, Browning CD, Udovic TJ, Conradi MS. Deuterium NMR study of LuD3. Phys Rev B 2003; 67(17):17415/1-8.
  36. Kodibagkar VD, Fedders PA, Browning CD, Bowman Jr. RC, Conradi MS. Vacancy Ordering Phase Transition in ZrBe2(H/D)x: NMR and Electronic Structure Study. Phys Rev B 2003; 67: 045107/1-7.
  37. Kodibagkar VD, Herberg JL, Bowman Jr. RC, Conradi MS. NMR Study of  a Temperature-Induced Structural Transition in ZrBe2Dx. J Alloys Comp 2001;330-332:179-182.
  38. Kodibagkar VD, Conradi MS. Remote Tuning of NMR Probe Circuits. J Magn Reson 2000;144(1):53-57. PMID 10783273
  39. Saam BT, Yablonskiy DA, Kodibagkar VD, Leawoods JL, Gierada DS, Cooper JD, Lefrak SS, Conradi MS. MRI Imaging of Diffusion of 3He Gas in Healthy and Diseased Lungs. Magn Res Med 2000;44(2):174-179. PMID10918314

*Equal contribution

Book Chapters

  1. Agarwal S and Kodibagkar VD. “Targeted Contrast Agents for 1H MRI of tumor microenvironment” In Cancer Therapeutics and Imaging: Molecular and Cellular Engineering and Nanobiomedicine‘ World Scientific Publishing. Eds, Rege K and Goklany S. 2016 (Accepted 4/9/16).
  2. Kodibagkar VD, Hallac RR, Zhao D, Yu J, Mason RP.19F NMR: clinical and molecular imaging applications” in Fluorine in Pharmaceutical and Medicinal Chemistry: From Biophysical Aspects to Clinical Applications, Imperial College Press, Eds. Gouvernear V and Müller K. 2012.